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Semester | Spring 2021 |
Instructor | Prof. Mohammed El-Kebir |
Time | TR 2:00-3:15 PM |
Location | Zoom: [link] (requires Illinois Zoom account) |
Office hours | Tuesdays 3:15-4:15 PM in 3216 Siebel Center |
This course introduces fundamental problems and algorithmic approaches in cancer genomics. Covered topics include:
Date | Presenter | Slides | Reading |
01/26/2021 | Mohammed El-Kebir | Introduction [slides] [recording] |
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01/28/2021 | Mohammed El-Kebir | Cancer Phylogenetics I [slides] [recording] |
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02/02/2021 | Mohammed El-Kebir | Cancer Phylogenetics II [slides] [recording] |
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02/04/2021 | Mohammed El-Kebir | Cancer Phylogenetics III [slides] [recording] |
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02/09/2021 | Mohammed El-Kebir | Consensus Trees [slides] [recording] |
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02/11/2021 | Mohammed El-Kebir | Single-cell Phylogenetics [slides] [recording] |
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02/16/2021 | Mohammed El-Kebir | Mutation Clusters I [slides] [recording] |
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02/18/2021 | Mohammed El-Kebir | Mutation Clusters II [slides] [notes] [recording] |
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02/23/2021 | Mohammed El-Kebir | Signatures [slides] [recording] |
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02/25/2021 | Mohammed El-Kebir | RECAP [slides] [recording] |
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03/02/2021 | Simone Zaccaria | CNA Calling I [recording] |
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03/04/2021 | Simone Zaccaria | CNA Calling II [recording] |
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03/11/2021 | Mohammed El-Kebir | CNA Phylogeny [slides] [recording] |
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03/16/2021 | Leah Weber | SCS Design [slides] [recording] |
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03/18/2021 | Mohammed El-Kebir | Metastasis I [slides] [recording] |
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03/23/2021 | Students | Papers 1-2 [recording] [slides 1] [slides 2] |
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03/25/2021 | Students | Papers 3-4 [recording] [slides 1] [slides 2] |
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03/30/2021 | Students | Papers 5-6 [recording] [slides 1] [slides 2] |
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04/01/2021 | Students | Papers 7-8 [recording] [slides 1] [slides 2] |
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04/06/2021 | Students | Papers 9-10 [recording] [slides 1] [slides 2] |
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04/08/2021 | Students | Papers 11-12 [recording] [slides 1] |
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04/15/2021 | Students | Papers 13-14 [recording] [slides 1] [slides 1] |
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04/20/2021 | Students | Projects 1-3 [recording] [slides 1] [slides 3] | |
04/22/2021 | Students | Projects 4-6 [recording] [slides] | |
04/27/2021 | Students | Projects 7-9 [recording] [slides 1] [slides 2] | |
05/04/2021 | Students | Projects 10-14 [recording] |
Counseling Center | 217-333-3704 | 610 East John Street Champaign, IL 61820 |
McKinley Health Center | 217-333-2700 | 1109 South Lincoln Avenue, Urbana, Illinois 61801 |