Mohammed El-Kebir
melkebir[AT]illinois[DOT]edu
| Date | Venue | Title |
| 08/2025 | BIRS Workshop (Banff) | Comparing and Summarizing Cancer Phylogenies |
| 08/2025 | NCI Spring School | Comparing and Summarizing Cancer Phylogenies |
| 07/2025 | CGSI 2025 | Introduction to Integer Linear Programming |
| 09/2024 | WABI 2024 | Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees [slides] |
| 07/2024 | CGSI 2024 | Introduction to Integer Linear Programming [slides] [Jupyter notebooks] |
| 07/2024 | CGSI 2024 | Introduction to RNA Design [slides] |
| 06/2024 | University College London | Combinatorial Algorithms for Cancer Phylogenetics |
| 06/2024 | BioSB Conference (keynote) | Combinatorial Algorithms for Cancer Phylogenetics |
| 05/2024 | Moderna | TRIBAL: Tree Inference of B cell Clonal Lineages |
| 05/2024 | Moderna | Algorithms for RNA Design & Structure and Interaction Prediction |
| 04/2024 | NCI SSACB 2024 | Advanced Integer Linear Programming for Cancer Phylogenetics [slides] [PPM notebook] [1-Dollo notebook] |
| 02/2024 | Indiana University | Algorithms for Cancer Phylogenetics |
| 07/2023 | CGSI 2023 | Inferring Migration Histories of Metastatic Cancers |
| 05/2023 | BIRS Workshop: Mathematical Methods in Cancer Biology, Evolution and Therapy | Inferring Migration Histories of Metastatic Cancers |
| 03/2023 | NCI Spring School | Combinatorial Algorithms for Cancer Phylogenetics |
| 11/2022 | ISCB/SMBE Webinar | Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses |
| 10/2022 | CRC Integromics Group at MD Anderson | Combinatorial Algorithms for Tumor Phylogenetics |
| 07/2022 | CGSI 2022 | Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses |
| 10/2021 | DePaul University (virtual) | Combinatorial Algorithms for Tumor Phylogenetics |
| 05/2021 | Sorbonne Université (virtual) | Combinatorial Algorithms for Tumor Phylogenetics |
| 02/2021 | Florida State University (virtual) | Combinatorial Algorithms for Tumor Phylogenetics |
| 10/2020 | CAME 2020 (virtual) | Characterizing SARS-CoV-2 viral diversity within and between hosts |
| 09/2020 | WABI 2020 | Phyolin: Identifying a Linear Perfect Phylogeny in Single-cell DNA Sequencing Data of Tumors |
| 09/2020 | ECCB 2020 | Detecting Evolutionary Patterns of Cancers using Consensus Trees |
| 07/2020 | MCW (Model Counting Workshop) 2020 | Counting and Sampling Problems in Computational Biology |
| 06/2020 | RECOMB-CCB 2020 | PhyDOSE: Design of Follow-up Single-cell Sequencing Experiments of Tumors |
| 01/2020 | PSB 2020 | PhySigs: Phylogenetic Inference of Mutational Signature Dynamics |
| 10/2019 | Center for Bioinformatics and Computational Biology, University of Maryland, College Park | Implications of Non-uniqueness of Solutions in Cancer Phylogenetics |
| 10/2019 | RECOMB-CG 2019 | SharpTNI: Sampling and Counting Parsimonious Transmission Networks under a Weak Bottleneck |
| 07/2019 | ISMB/ECCB 2019 | Summarizing the Solution Space in Tumor Phylogeny Inference by Multiple Consensus Trees |
| 07/2019 | ISMB/ECCB 2019 | Descendant Cell Fraction: Accounting for Mutation Loss in Cancer Evolution |
| 06/2019 | DSW 2019 | Implications of Non-uniqueness of Solutions in Cancer Phylogenetics |
| 05/2019 | RECOMB-CCB 2019 | Summarizing the Solution Space in Tumor Phylogeny Inference by Multiple Consensus Trees |
| 03/2019 | CISS 2019 | Non-uniqueness of Solutions in Phylogenetic Deconvolution of Bulk DNA Samples of Tumors |
| 11/2018 | CS 591 (UIUC) | Research Topics |
| 10/2018 | CS 100 (UIUC) | Introduction to Bioinformatics and Computational Biology |
| 10/2018 | RECOMB-CG 2018 (Magog-Orford, Quebec, Canada) | On the Non-uniqueness of Solutions to the Perfect Phylogeny Mixture Problem |
| 09/2018 | ECCB 2018 (Athens, Greece) | SPhyR: Tumor Phylogeny Estimation from Single-Cell Sequencing Data under Loss and Error |
| 08/2018 | WABI 2018 (Helsinki, Finland) | Parsimonious Migration History Problem: Complexity and Algorithms |
| 07/2018 | Mayo Clinic (Rochester, MN) | Algorithms for Tumor Phylogenetics (talk and poster) |
| 07/2018 | ISMB 2018 (SCANGEN) | SPhyR: Tumor Phylogeny Estimation from Single-Cell Sequencing Data under Loss and Error |
| 07/2018 | ISMB 2018 | Inferring Parsimonious Migration Histories for Metastatic Cancers |
| 04/2018 | Indiana University Bloomington | Combinatorial Algorithms for Tumor Phylogenetics |