| Date |
Venue |
Title |
| 09/03/2024 |
WABI 2024 |
Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees [slides] |
| 07/18/2024 |
CGSI 2024 |
Introduction to Integer Linear Programming [slides] [Jupyter notebooks] |
| 07/13/2024 |
CGSI 2024 |
Introduction to RNA Design [slides] |
| 04/02/2024 |
NCI SSACB 2024 |
Advanced Integer Linear Programming for Cancer Phylogenetics [slides] [PPM notebook] [1-Dollo notebook] |
| 05/16/2023 |
BIRS Workshop: Mathematical Methods in Cancer Biology, Evolution and Therapy |
Inferring Migration Histories of Metastatic Cancers |
| 10/25/2022 |
CRC Integromics Group at MD Anderson |
Combinatorial Algorithms for Tumor Phylogenetics |
| 07/09/2022 |
CGSI 2022 |
Accurate Identification of Transcription Regulatory Sequences and Genes in Coronaviruses |
| 09/08/2020 |
WABI 2020 |
Phyolin: Identifying a Linear Perfect Phylogeny in Single-cell DNA Sequencing Data of Tumors |
| 09/07/2020 |
ECCB 2020 |
Detecting Evolutionary Patterns of Cancers using Consensus Trees |
| 07/09/2020 |
MCW (Model Counting Workshop) 2020 |
Counting and Sampling Problems in Computational Biology |
| 06/18/2020 |
RECOMB-CCB 2020 |
PhyDOSE: Design of Follow-up Single-cell Sequencing Experiments of Tumors |
| 01/06/2020 |
PSB 2020 |
PhySigs: Phylogenetic Inference of Mutational Signature Dynamics |
| 10/15/2019 |
Center for Bioinformatics and Computational Biology, University of Maryland, College Park |
Implications of Non-uniqueness of Solutions in Cancer Phylogenetics |
| 10/03/2019 |
RECOMB-CG 2019 |
SharpTNI: Sampling and Counting Parsimonious Transmission Networks under a Weak Bottleneck |
| 07/23/2019 |
ISMB/ECCB 2019 |
Summarizing the Solution Space in Tumor Phylogeny Inference by Multiple Consensus Trees |
| 07/22/2019 |
ISMB/ECCB 2019 |
Descendant Cell Fraction: Accounting for Mutation Loss in Cancer Evolution |
| 06/03/2019 |
DSW 2019 |
Implications of Non-uniqueness of Solutions in Cancer Phylogenetics |
| 05/03/2019 |
RECOMB-CCB 2019 |
Summarizing the Solution Space in Tumor Phylogeny Inference by Multiple Consensus Trees |
| 03/21/2019 |
CISS 2019 |
Non-uniqueness of Solutions in Phylogenetic Deconvolution of Bulk DNA Samples of Tumors |
| 11/05/2018 |
CS 591 (UIUC) |
Research Topics |
| 10/17/2018 |
CS 100 (UIUC) |
Introduction to Bioinformatics and Computational Biology |
| 10/11/2018 |
RECOMB-CG 2018 (Magog-Orford, Quebec, Canada) |
On the Non-uniqueness of Solutions to the Perfect Phylogeny Mixture Problem |
| 09/10/2018 |
ECCB 2018 (Athens, Greece) |
SPhyR: Tumor Phylogeny Estimation from Single-Cell Sequencing Data under Loss and Error |
| 08/20/2018 |
WABI 2018 (Helsinki, Finland) |
Parsimonious Migration History Problem: Complexity and Algorithms |
| 07/19/2018 |
Mayo Clinic (Rochester, MN) |
Algorithms for Tumor Phylogenetics (talk and poster) |
| 07/10/2018 |
ISMB 2018 (SCANGEN) |
SPhyR: Tumor Phylogeny Estimation from Single-Cell Sequencing Data under Loss and Error |
| 07/09/2018 |
ISMB 2018 |
Inferring Parsimonious Migration Histories for Metastatic Cancers |
| 04/18/2018 |
Indiana University Bloomington |
Combinatorial Algorithms for Tumor Phylogenetics |
