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Semester | Spring 2020 |
Instructor | Prof. Mohammed El-Kebir |
TA | Sarah Christensen (sac2) |
Time | TR 2:00-3:15 PM |
Location | 1214 Siebel Center |
Office hours | Tuesdays 3:15-4:15 PM in 3216 Siebel Center |
TA office hours | Wednesdays 11-11:59 AM in Siebel Center |
This course introduces fundamental problems and algorithmic approaches in cancer genomics. Covered topics include:
Date | Presenter | Slides | Reading |
01/21/2020 | Mohammed El-Kebir | Introduction [slides] |
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01/23/2020 | Mohammed El-Kebir | Cancer Phylogenetics I [slides] |
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01/28/2020 | Mohammed El-Kebir | Cancer Phylogenetics II [slides] |
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01/30/2020 | Mohammed El-Kebir | Cancer Phylogenetics III [slides] |
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02/04/2020 | Mohammed El-Kebir | Consensus Trees [slides] |
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02/06/2020 | Mohammed El-Kebir | Single-cell Phylogenetics [slides] |
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02/11/2020 | Mohammed El-Kebir | CNA/SNV Interplay [slides] |
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02/13/2020 | Mohammed El-Kebir | Mutation Clusters I [slides on Piazza] | |
02/18/2020 | Mohammed El-Kebir | Mutation Clusters II [notes] | |
02/20/2020 | Sarah Christensen | Signatures [slides] |
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02/25/2020 | Mohammed El-Kebir | Metastasis I [slides] |
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02/27/2020 | Mohammed El-Kebir | Metastasis II [slides] |
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03/03/2020 | Mohammed El-Kebir | CNA Phylogeny [slides] |
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03/05/2020 | Mohammed El-Kebir | ILP [slides] [notebook] [clique] |
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03/10/2020 |
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Paper presentations [slides I] [slides II] |
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03/12/2020 | TBD | Paper presentations [slides I] [slides II] |
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03/24/2020 | TBD | Paper presentations [slides I] [slides II] |
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03/26/2020 | TBD | Paper presentations [slides I] [slides II] |
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03/31/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/02/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/07/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/09/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/14/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/16/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/21/2020 | TBD | Paper presentations [slides I] [slides II] |
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04/23/2020 | TBD | Projects I [slides I] [slides II] |
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04/28/2020 | TBD | Projects II [slides I] [slides II] |
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04/30/2020 | TBD | Projects III [slides I] [slides II] |
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05/05/2020 | TBD | Projects IV [slides I] [slides II] |
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