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Semester | Fall 2021 |
Instructor | Prof. Mohammed El-Kebir |
TA | Yuanyuan Qi (yq7), Leah Weber (leahlw2) |
Time | WF 2:00-3:15 PM |
Location | 1302 Everitt Lab, or Zoom: [link] (only accessible with Illinois Zoom account) |
Instructor office hours | Wednesdays 3:30-4:30 PM in 3216 Siebel Center, or Zoom: [link] (only accessible with Illinois Zoom account) |
TA office hours | Mondays, 4-5 PM (Leah); Fridays 9-10 AM (Yuanyuan) on Zoom [link] |
Piazza | [link] |
This course introduces fundamental problems and algorithmic approaches in computational biology. Covered topics include:
Undergraduates will receive 3 undergraduate credits; graduate students can enroll for 3 or 4 graduate credits.
3-credit students:This is a tentative schedule and subject to change.
Date | Presenter | Slides | Reading |
08/25/2021 | Mohammed El-Kebir | Introduction [slides] [recording] [jupyter] |
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08/27/2021 | Mohammed El-Kebir | Sequence alignment I [slides] [recording] |
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09/01/2021 | Mohammed El-Kebir | Sequence alignment II [slides] [recording] |
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09/03/2021 | Mohammed El-Kebir | Sequence alignment III [slides] [recording] |
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09/08/2021 | Mohammed El-Kebir | Sequence alignment IV [slides] [recording] |
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09/10/2021 | Mohammed El-Kebir | Multiple Sequence Alignment I [slides] [recording] |
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09/15/2021 | Mohammed El-Kebir | Multiple Sequence Alignment II [slides] [recording I] [recording II] |
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09/17/2021 | Mohammed El-Kebir | Multiple Sequence Alignment III [slides] [recording] |
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09/22/2021 | Mohammed El-Kebir | Multiple Sequence Alignment IV [slides] [recording] |
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09/24/2021 | Mohammed El-Kebir | Multiple Sequence Alignment V [recording] | |
09/29/2021 | Mohammed El-Kebir | Research talk [recording] | |
10/01/2021 | TBD | Research talk + Midterm review [slides] [recording] | |
10/06/2021 | Midterm (7-10pm CT) | ||
10/08/2021 | No class | ||
10/13/2021 | Mohammed El-Kebir | Phylogeny I [slides] [recording] |
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10/15/2021 | Mohammed El-Kebir | Phylogeny II [slides] [recording] |
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10/20/2021 | Mohammed El-Kebir | Phylogeny III [slides I] [slides II] [recording] |
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10/22/2021 | Mohammed El-Kebir | Phylogeny IV [slides] [recording] | |
10/27/2021 | Mohammed El-Kebir | Phylogeny V [slides] [recording] |
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11/03/2021 | Mohammed El-Kebir | RNA Secondary Structure Prediction [slides] [recording] | |
11/05/2021 | Mohammed El-Kebir | Genome Sequencing [slides] [recording] |
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11/10/2021 | Mohammed El-Kebir | Genome Assembly [slides I] [slides II] [slides III] [recording] |
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11/12/2021 | Mohammed El-Kebir | HMM I [slides] [recording] |
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11/17/2021 | Mohammed El-Kebir | HMM II [slides] [recording] |
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11/19/2021 | Mohammed El-Kebir | HMM III [slides] [recording] |
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12/01/2021 | Students | Project presentations [recording] | |
12/03/2021 | Students | Project presentations [recording] | |
12/08/2021 | Leah Weber | Final review [slides] [recording] | |
12/10/2021 | Final (7-10pm CT) |
Counseling Center | 217-333-3704 | 610 East John Street Champaign, IL 61820 |
McKinley Health Center | 217-333-2700 | 1109 South Lincoln Avenue, Urbana, Illinois 61801 |